Our Tools

3D-EM Map & Model Analysis

JANAS | A command-line toolkit for particle ranking, subset selection and class reassignment in single-particle cryo-EM workflows.

TEMPy-ReFF | Refinement of macromolecular assemblies using 3D-EM maps.

RIBFIND2 | Finding rigid bodies in protein and nucleic acid structures.

ChemEM | A tool for docking ligands in cryoEM maps.

Flex-EM | A method for refinement of protein structures guided by cryoEM density.

TEMPy | A python library for structural analysis of macromolecular assemblies using 3D-EM maps.

Mod-EM | Density class in MODELLER. A method for rigid body cryoEM density fitting. Tutorial on combining comparative modelling and density fitting, and Mod-EM dataset.