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PICKLUSTER
PICKLUSTER is an UCSF ChimeraX plug-in that clusters protein interfaces based on distance. PICKLUSTER provides various scoring metrics for the analysis of the interface, not only of structures of protein complexes but also of models generated by AlphaFold2 and AlphaFold3. It includes the calculation of the combined scoring metrics C2Qscore.
The link to gitlab is here.
References:
- Genz LR, Mulvaney T, Nair S, Topf M. (2023) PICKLUSTER: a protein-interface clustering and analysis plug-in for UCSF ChimeraX. Bioinformatics 39(11). doi.org/10.1093/bioinformatics/btad629
- Genz LR, Nair S, Nagar N, Topf M. (2025) Assessing scoring metrics for AlphaFold2 and AlphaFold3 protein complex predictions. Prot Sci. 34:e70327. doi.org/10.1002/pro.70327
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